PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g029840.1
Common NameMTR_5g029840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 335aa    MW: 37824.4 Da    PI: 6.7169
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g029840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d+++++G g+W t +++ g++R++k+c++rw +yl
  Medtr5g029840.1 14 KGPWTQEEDEKLIDYINKHGHGNWGTLSKRAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.65.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+  +++++  lG++ W++Ia++++ gRt++++k++w++
  Medtr5g029840.1  67 RGKFTDEEERVIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.014961IPR017930Myb domain
SuperFamilySSF466898.81E-3311108IPR009057Homeodomain-like
SMARTSM007171.8E-171363IPR001005SANT/Myb domain
PfamPF002494.9E-181461IPR001005SANT/Myb domain
CDDcd001671.04E-131661No hitNo description
PROSITE profilePS5129427.4362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2665116IPR009057Homeodomain-like
SMARTSM007175.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1567110IPR001005SANT/Myb domain
CDDcd001676.05E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRSPCCDEI GVKKGPWTQE EDEKLIDYIN KHGHGNWGTL SKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TDEEERVIIN LHSVLGNKWS KIAAHLPGRT DNEIKNYWNT NIRKKLLKMG  120
IDPETHKPRT DYNHLMSLSN LLGMSNIGNT FSNNPLGLQP DITHLAKMQL LQNMLQIMNT  180
NNSFGNMGNY PYNPLGNINP SFNPFNLFLN GTNTIQTNEP LGLSGGEEYA MNPSLYSYGQ  240
SESSKQDISK GESSLQDLDY SKMRSISCVN QEENLLPALV ASSPRIGIFN QIENDRNKAQ  300
MSIDHSPSNA IFDDWEKFLD DESSGGSYWK ELLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g029840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541950.0CR954195.3 Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612858.20.0transcription factor MYB41
TrEMBLA0A396HN750.0A0A396HN75_MEDTR; Putative transcription factor MYB-HB-like family
TrEMBLG7KDP90.0G7KDP9_MEDTR; Myb transcription factor
STRINGAES958160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-90myb domain protein 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]