PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g031650.1
Common NameMTR_5g031650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 227aa    MW: 25403.3 Da    PI: 10.3803
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g031650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.74.3e-09108185790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A+++GF++++++s+         + ++vC ++g+++  +kk   ++ ++ + ++gC  ++   ++k +++w ++ l+  HnH++ 
  Medtr5g031650.1 108 ANKAGFTIVTQRSSLI-----NPMFRLVCERSGTHKVPEKK--PKHARTGSRKCGCLFMISGYQRKqTKEWGLNILNGVHNHPME 185
                      8999999999876665.....34889**********99998..888889999********9766666***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-6108185IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGIYVSYVEP CHGNPRQLTA EENFGSLVPR KTSTKQNFVE NSGDVKPPNV EAKPNIDGAS  60
VHVEASMYVG GSGVLPLQPH EVDTAKFFSD DVKSKNRDEL LEWVRRQANK AGFTIVTQRS  120
SLINPMFRLV CERSGTHKVP EKKPKHARTG SRKCGCLFMI SGYQRKQTKE WGLNILNGVH  180
NHPMEPALEG HILAGRLKKD DKKIVRDLTK SKMLPRNILI HLKKQV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248520.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g031650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9369460.0CR936946.2 Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JWA91e-168G7JWA9_MEDTR; FAR1 DNA-binding domain protein
STRINGAES694341e-144(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]