PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g032260.1
Common NameMTR_5g032260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 413aa    MW: 46606.6 Da    PI: 8.6211
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g032260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.57.7e-123173703490
             FAR1  34 vCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +C k+ + ++++++   ++++r+  ++gC+a+l++kk+ d+kw v+++ ++HnHel+
  Medtr5g032260.1 317 NCWKNIHGKKRESN---SQNPRPYLKVGCEASLRIKKNCDAKWIVHSFIKDHNHELF 370
                      56665555555544...889***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF065079.0E-2154133IPR010525Auxin response factor
PfamPF031014.3E-9318370IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFTKFDVQKY FQKQKYEGLE ITIASWGQAA NSHRISLPSS VLSANNMPID ALVVAANRTL  60
LPVVYYPGAC VSEFVVPLSK YNNALFVSQL SIGLRFDMMF ETKAFDTCCN MGTIVGISDL  120
DPLMWPDSRW KNIEVKWDKP DCGGKPNRVC SWDILLSSRS LASSSKRPLQ SRLSEITCSQ  180
SAISLSRSKK CQDSSVVEMK GGSTLKMAEV LLFNDPVDGS LEGVTENIML GQLYPIGTDE  240
YTRLLMNIHV SILLSSPGRS KGADNKANAL GLQIFNAPYY KHIGPEWFLG KEVYDHCPIM  300
LSEASQNWVP KPFCMLNCWK NIHGKKRESN SQNPRPYLKV GCEASLRIKK NCDAKWIVHS  360
FIKDHNHELF SAYSHYFPCH REINKAQKHS IETLHHVWSE NKQIFCHNGQ RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-3830154259387Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g032260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317281e-152CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JXN70.0G7JXN7_MEDTR; Auxin response factor
STRINGAES960220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2790523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.12e-38ARF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]