PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g032375.1
Common NameMTR_5g032375
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 215aa    MW: 24249.2 Da    PI: 10.7758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g032375.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-0847100354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 
                      ++h+e+E+rRR riN  +++Lr+   k +  +a +   +Ka+iL ++++ +k+L
  Medtr5g032375.1  47 KKHSEAEKRRRMRINGQYDTLRRRTVKYVdvAAIAITKDKASILVETIKQVKDL 100
                      68**********************999888677777799********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.09E-843110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.06444100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-547100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-447103No hitNo description
Gene3DG3DSA:4.10.280.106.9E-948113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.25E-8139207No hitNo description
CDDcd048739.13E-7141191No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-8141201No hitNo description
PfamPF137401.2E-5141205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQHVRNYYNG EAQMLRSNFS SSFISQTFKS SFSKQRSKAE NKLLAAKKHS EAEKRRRMRI  60
NGQYDTLRRR TVKYVDVAAI AITKDKASIL VETIKQVKDL KKKASKLEDS HGTSKEIKFP  120
SGADKLNLEK CNDDEGLVKA TLSCEDRPGL MSSISRALLS MKAKVVKVEM VTVGGRTRSV  180
LWVQGVENES LGMLKSTLKV VMHKPSFKMR QYIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g032375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317280.0CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640069.11e-143transcription factor bHLH131
TrEMBLA0A072UF381e-156A0A072UF38_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES960311e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]