PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g034030.1

Common Name

MTR_5g034030

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

YABBY

Protein Properties

Length: 218aa MW: 24361.4 Da PI: 4.8523

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g034030.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.9	7.6e-64	6	164	2	166
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 ++f+ +eq+CyvqC+fCntil+vsvP +sl +vvtvrCGhCtsllsvn++kas +lla+ hl+++ + +e+ +++ +++ Medtr5g034030.1 6 HLFDLPEQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLTHLEQKE-------SSSPDEDANKTL--NSN 90 7899********************************************99977777777777754322.......222222222222..222 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +s+s+ +++ + +ed+ +p v++PPekrqr Psaynrfikeei+r+ka+nPd++h+eafs+aaknWa P+ Medtr5g034030.1 91 TSASMMTYS-DCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCPPT 164 222222222.5677888888888**********************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-63	11	165	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-9	111	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.2E-7	114	165	IPR009071	High mobility group box domain
CDD	cd01390	1.00E-5	122	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCNTILMVSV PCSSLTMVVT VRCGHCTSLL SVNMMKASFV 60 PFHLLASLTH LEQKESSSPD EDANKTLNSN TSASMMTYSD CEEDDVIPIS NVVNKPPEKR 120 QRTPSAYNRF IKEEIKRLKA KNPDMAHKEA FSTAAKNWAN CPPTQCKGDE ESCSQTDQFV 180 DLDSQVDPNE AEVNEEEQGF RGRKVPRNSI LERTPFE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g034030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT025841	4e-69	CT025841.2 Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE.
GenBank	CT573503	4e-69	CT573503.1 Medicago truncatula chromosome 5 clone mth2-117h16, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613209.1	1e-162	axial regulator YABBY 4
Swissprot	Q9LDT3	2e-71	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	G7K086	1e-161	G7K086_MEDTR; YABBY transcription factor
STRING	AES96167	1e-162	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	8e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Medtr5g034030.1
Entrez Gene	11405863

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]