PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g037250.1
Common NameMTR_5g037250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 240aa    MW: 26558.4 Da    PI: 7.1279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g037250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10122168454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++YI+sL
  Medtr5g037250.1 122 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKALVLDEIINYIQSL 168
                      8*************************9....677***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.23E-10116173No hitNo description
SuperFamilySSF474599.16E-18116187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-18118184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.082118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDPAYHLPEI WQSRPPHLAP GYPDFSIQDL TSEQKPLNHA RKITRVTNED SVQCVSTTNG  60
GARGNSNAVN DDGGDGKRSK TSGNSKGEEN SSGKHAEETS DEPHPKKDYI HVRARRGQAT  120
DSHSLAERAR REKISERMKT LQDLVPGCNK VIGKALVLDE IINYIQSLHH QVEFLSMKLE  180
AVNSRPTPGM EVFPPKTFDQ QTFDTTAIPF ASHATREYSR GASPEWLHMQ LGGGFERTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.253950.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g037250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466840.0BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613488.10.0transcription factor BHLH089
SwissprotQ69WS31e-66BH094_ORYSJ; Transcription factor BHLH094
TrEMBLG7K7141e-180G7K714_MEDTR; Putative transcription factor bHLH family
STRINGAES964461e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-82BIG PETAL P
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]