PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g038280.1
Common NameMTR_5g038280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36835.7 Da    PI: 4.4306
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g038280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1887140356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq++ Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa+ k
  Medtr5g038280.1  87 KKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFK 140
                      56689***********************************************98 PP
2HD-ZIP_I/II1322.2e-4287178293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrls+eqv++LE+sFe e+kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk+++d+lk++ ++L +e+++L+ee+++
  Medtr5g038280.1  87 KKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKLKEEVNS 178
                      9***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1976144IPR009057Homeodomain-like
PROSITE profilePS5007117.58982142IPR001356Homeobox domain
SMARTSM003892.3E-1885146IPR001356Homeobox domain
PfamPF000467.1E-1687140IPR001356Homeobox domain
CDDcd000861.13E-1787143No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2089149IPR009057Homeodomain-like
PRINTSPR000315.0E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000315.0E-6122138IPR000047Helix-turn-helix motif
PfamPF021831.2E-17142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGGKLFGGS NMSLLLQNER LPCTSEVLES LWVHTPASFQ GSNSVVNFEN GGGSNRVVTD  60
RPFFQQLEKE ENCGDEDYEA CYHQQGKKRR LSSEQVQFLE KSFEVENKLE PDRKVQLAKE  120
LGLQPRQVAI WFQNRRARFK TKQLEKDYGT LKASFDSLKD DYDNLLQEND KLKEEVNSLK  180
NKLIPRDKEK VNSEDKSSPE AINSPHNNID PMDIISITNS ENGSKMSLPN MVLKCKQEDA  240
NSAKSDVLDS DSPHCNDGNN LSSFIEPTDS DFSQDEEDND NLSHNLLTLP CLPKVEDVCY  300
DDPHENSCNF GFPVEDQTFC FWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARFKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.13760.0leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g038280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1464130.0BT146413.1 Medicago truncatula clone JCVI-FLMt-17A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361309.10.0homeobox-leucine zipper protein HAT5
TrEMBLG7K9R50.0G7K9R5_MEDTR; Homeobox leucine zipper family protein
STRINGAES965360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-44homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]