PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g039760.1

Common Name

MTR_5g039760

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 191aa MW: 22395.7 Da PI: 10.0235

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g039760.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.2e-14	24	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+ +Y+ +v F +r++ ++k+ ++g++t+ ++ C keg +++ +k++ + + +r+ rt+ a++++++ k+gk ++++++ eH H+l+ Medtr5g039760.1 24 QFWLAYGLRVDFGIRVRFTNKK-KDGSVTSCRLFCCKEGLKNKGNKNAYEGKYERTDIRTNFLARITLSRCKNGKLVIHEFKYEHYHDLQ 112 69************998887.88889999999*****99999**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-11	24	112	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVSTNVDWKS EVGMGFDNME EAKQFWLAYG LRVDFGIRVR FTNKKKDGSV TSCRLFCCKE 60 GLKNKGNKNA YEGKYERTDI RTNFLARITL SRCKNGKLVI HEFKYEHYHD LQNPETTHIQ 120 KSTFQLMNTH AGHRANVGFT KKDVRNYILA KRKRSMAYGE IGCLSQYFQR QLLENPSFFH 180 IFFIMNYPYI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g039760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP700167	0.0	FP700167.1 Medicago truncatula chromosome 5 clone mth2-16h14, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024629356.1	1e-86	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024632443.1	1e-86	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024632444.1	1e-86	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7KCK2	1e-141	G7KCK2_MEDTR; FAR1 DNA-binding domain protein
STRING	AES96659	1e-142	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Medtr5g039760.1
Entrez Gene	11417554

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]