PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g040880.1
Common NameMTR_5g040880
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 525aa    MW: 58203.9 Da    PI: 6.7873
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g040880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.9e-20114214299
                      EEE-..-HHHHTT-EE--HHH.HTT......---..--.SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkees.ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       k+ltpsd+++ g +++p ++a+ +      +  +e++ ++l++ d +g++W++++ yr+++ r++lt+ W+eFv+ ++L  gD+++F+  ++s
  Medtr5g040880.1 114 SKTLTPSDANNGGAFSVPVECAKLIfppldlN--TEKPfQELSISDIHGKVWKFRHVYRGTPLRHLLTTDWSEFVDKKRLVGGDSLIFM--KDS 203
                      599*******************888****653..4433149************************************************..779 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++  v+v+r+
  Medtr5g040880.1 204 DGNISVGVRRQ 214
                      9*******997 PP
2Auxin_resp43.91.1e-15231310183
       Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++ +FevvY+P a ++ +Fvv ++ ve+a+++++s+G R+ ++  + dss+r     Gt++++s+      pn +Wr+L+
  Medtr5g040880.1 231 AVELADKNLAFEVVYYPTAkGWCNFVVDAKVVEDAMNISWSLGVRIELSSKNYDSSKRCSkfEGTISALSA------PNCPWRMLE 310
                      67889999*********87379**********************************9976669*****999......799999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30103215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-25109215IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-17112213No hitNo description
SMARTSM010197.9E-14113215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857113215IPR003340B3 DNA binding domain
PfamPF023628.7E-18114214IPR003340B3 DNA binding domain
PfamPF065071.6E-13231309IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSSQQRRVDQ KIWQCCAGSS VKIPKLYSHV YYFPLGHLEH ICPSPNPNTL SHLDRSRPFI  60
LCTVSAVDLL ADLCTDEVFV KLLLTPVTNK GVHEPHSLEV REDKDDDKKV VSYSKTLTPS  120
DANNGGAFSV PVECAKLIFP PLDLNTEKPF QELSISDIHG KVWKFRHVYR GTPLRHLLTT  180
DWSEFVDKKR LVGGDSLIFM KDSDGNISVG VRRQTKFGGA AKITEKSFTE AVELADKNLA  240
FEVVYYPTAK GWCNFVVDAK VVEDAMNISW SLGVRIELSS KNYDSSKRCS KFEGTISALS  300
APNCPWRMLE VKWDEPKVSQ VPERVSPWEV ETISDIFALH PQFHPTKKLK KSDPDSAAFS  360
DKKGDSFIPN IEAFLKMVPN IEFKHFVMTS SNQTLLNNDA FLDSMQGARH GLFSTSTSSN  420
FGNDKSNGFL GNNSMAVSSN VSSEPNTAAP ISLDLSPHSH DISNSRGTKF AGTDSSTEKV  480
SPGSFMLFGK IIKPVRSDFQ EFDIKGNDDC EGSNEIEGIK LAQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-55833251389Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g040880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1469710.0AC146971.16 Medicago truncatula clone mth2-128d1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613783.10.0auxin response factor 17
TrEMBLG7KF950.0G7KF95_MEDTR; Auxin response factor
STRINGAES967410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-104auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]