PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g041650.1
Common NameMTR_5g041650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 403aa    MW: 45575.3 Da    PI: 8.2346
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g041650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61.1e-204690145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     kr en+  rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+ gk
  Medtr5g041650.1 46 KRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGK 90
                     689**************************************9986 PP
2K-box14.91.1e-061472211085
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      ++++ e l+ +++ L k+i+++ +      + d+e++s +  L qLe+ L++sl++i ++K+++ ++q+  lq  ++
  Medtr5g041650.1 147 SSQTVEDLSDQAKHLHKRISEIHER--LSNWSDIEKISsVDKLGQLENSLKESLNQIQTHKENVQKQQLASLQCNNQ 221
                      677889999999********99985..66789****972567***************************99997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.5773890IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-283897IPR002100Transcription factor, MADS-box
CDDcd001201.04E-243991No hitNo description
SuperFamilySSF554551.83E-2439132IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-174060IPR002100Transcription factor, MADS-box
PfamPF003192.1E-184891IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-176075IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-177596IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.418144237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVVLLRLLVI LNGDMANQTK SLTAPYSFGR SNDRFFWMGR VKLKIKRLEN TNGRQATYAK  60
RKNGIMKKAS ELSILCDIDI ILLMFSPGGK PSLCTGRRSN FEEVIAKFAQ LTSQERAKRK  120
LESLEALKKT FKKLDHDVNI QDFYGTSSQT VEDLSDQAKH LHKRISEIHE RLSNWSDIEK  180
ISSVDKLGQL ENSLKESLNQ IQTHKENVQK QQLASLQCNN QFNELQLPYK MSHQQHLQSL  240
SWMVNGDSQN LVLPEDSNLL LHKDVEGSTS SSFGSYASYL GSSTKTNMSN SGQESCIIND  300
MSNTTTAPVR LQQFNGQVPY IPNNFNIMND MKLQPVTGMN NPHENQVDNY HVNANFEAPR  360
QGFDQSNNHH GWTSNSGPCA VNIFDEHLYP QGNFPQVHFG FT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1238129190MEF2 CHIMERA
6byy_B2e-1238129190MEF2 CHIMERA
6byy_C2e-1238129190MEF2 CHIMERA
6byy_D2e-1238129190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g041650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258400.0CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639093.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-98AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLG7KGN70.0G7KGN7_MEDTR; MADS-box transcription factor family protein
STRINGAES968030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-78AGAMOUS-like 30
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]