PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g042920.1
Common NameMTR_5g042920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 434aa    MW: 47548.5 Da    PI: 7.2807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g042920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33151206258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers   ++++ i+Y+geHnh
  Medtr5g042920.1 151 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-AGHITAIIYKGEHNH 206
                      8****************************************.9************** PP
2WRKY107.85.3e-34319377159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Medtr5g042920.1 319 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 377
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29138209IPR003657WRKY domain
SuperFamilySSF1182901.7E-25148209IPR003657WRKY domain
SMARTSM007742.0E-36150208IPR003657WRKY domain
PROSITE profilePS5081123.273151209IPR003657WRKY domain
PfamPF031061.4E-25151206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37304379IPR003657WRKY domain
SuperFamilySSF1182907.06E-30311379IPR003657WRKY domain
PROSITE profilePS5081138.836314379IPR003657WRKY domain
SMARTSM007741.3E-39319378IPR003657WRKY domain
PfamPF031062.6E-26320377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDQPPWKEEE AAVGGGDGGP PQRPTLTLPP RTDVLFSGGF SPGPMTLLSN LFADSDDGKS  60
FSQLLAGSMV SPAPLTAGGL DSSGFFSHPQ VSFGMTQQQP LAQVSAHEGP SNTNMHNQAE  120
HLSYVPTSTD HAPLSEQRLQ PSSLNVDKPA DDGYNWRKYG QKQVKGSEFP RSYYKCTHPN  180
CPVKKKVERS LAGHITAIIY KGEHNHLLPN PNKRSKDTIT SNENSNMQGS ADSTYQRMTS  240
NSMSKMEPES SQATVEHLSG TSDSEDVGDR ETEVHEKRIE PDSKRRNTEV TVSNPTTSSH  300
RTVTEPKIIV QTTSEVDLLD DGYRWRKYGQ KVVKGNPYPR SYYKCTTPGC NVRKHVERAS  360
TDPKAVITTY EGKHNHDVPA AKTNSHTIAN NNASQLKSQN TISEKTSFGS IGIGEGNEQQ  420
PVARLRLKEE QIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-44151380878Probable WRKY transcription factor 4
2lex_A3e-44151380878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.27780.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g042920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376570.0CU137657.2 Medicago truncatula chromosome 5 clone mte1-29c13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613943.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-145WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLG7JWM90.0G7JWM9_MEDTR; Putative transcription factor WRKY family
STRINGAES969010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-143WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]