PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g044695.3
Common NameMTR_6g038890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 108aa    MW: 11908.4 Da    PI: 8.3286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g044695.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.54.6e-1777105230
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa 30 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a
  Medtr5g044695.3  77 NDGCQWRKYGQKMAKGNPCPRAYYRCTMA 105
                      8**************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-1761104IPR003657WRKY domain
SuperFamilySSF1182903.79E-1569104IPR003657WRKY domain
PROSITE profilePS5081116.5771107IPR003657WRKY domain
SMARTSM007741.2E-676106IPR003657WRKY domain
PfamPF031061.7E-1377104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MNGPAAKVDD QQEPEPCTPQ NNHKEPDPDA SELVQLLDRS QLPRLNPSNA ADQANAEATM  60
RKARVSVRAR SEAHMINDGC QWRKYGQKMA KGNPCPRAYY RCTMALG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143241e-178root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g044695.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0276651e-122CT027665.3 Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE.
GenBankCT9631151e-122CT963115.2 Medicago truncatula chromosome 5 clone mte1-43g8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610463.29e-73probable WRKY transcription factor 31
SwissprotQ9XEC31e-29WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A072UA843e-74A0A072UA84_MEDTR; WRKY family transcription factor
STRINGAES970534e-75(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-32WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]