PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g046040.1
Common NameMTR_5g046040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 374aa    MW: 42170.3 Da    PI: 5.8262
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g046040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183590156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +r R+ +t++qle+Lee+F+++++p+++++ +L+k+l L+  q+++WFqN+R++ k
  Medtr5g046040.1 35 KRYRRPHTPNQLERLEEVFKECPKPNEKQKLQLSKELALSYGQIRFWFQNKRTQTK 90
                     799*************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-172786IPR009057Homeodomain-like
SuperFamilySSF466891.13E-163193IPR009057Homeodomain-like
PROSITE profilePS5007117.2483292IPR001356Homeobox domain
SMARTSM003898.3E-153496IPR001356Homeobox domain
CDDcd000868.51E-163590No hitNo description
PfamPF000462.3E-163590IPR001356Homeobox domain
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEYESGGSGG SFDSQSKKKL HRRPRTPDEI QSKKKRYRRP HTPNQLERLE EVFKECPKPN  60
EKQKLQLSKE LALSYGQIRF WFQNKRTQTK AKLERNDNRL LRAENDKIRC ENISMKEALE  120
NSICSSGGCP PINGDCYFDR KRLRFENILL KDELYKESSI ISEYTGRSVS WFPPVPPIHI  180
SSLDSTMGSF SGQGLVGHSF DIGESHNNHS SLLCPKGKGK LLNPSSLPSS GQLLMNEQLP  240
QQSWTPRYQN MQVDTFGNAM SHAQYFGQDS ATVPPHFDLD VQNHILLGVD FDSSDLLLPT  300
IDSSDLLLPT IDSSDLLLPT TIPGYTTSLC ETGASTMQLG EFGFEGFDDP WESFMNSIWH  360
DEILSPEDIQ KIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11635KKKLHRRPRTPDEIQSKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g046040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9363260.0CR936326.2 Medicago truncatula chromosome 5 clone mte1-25j21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152598.13e-68hypothetical protein PHAVU_004G143500g
TrEMBLG7JWW70.0G7JWW7_MEDTR; Homeobox protein
STRINGAES971470.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.18e-57homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]