PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g046160.1
Common NameMTR_5g046160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 261aa    MW: 30133.2 Da    PI: 9.9084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g046160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00062140170536
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapsk 36 
                      h   E++R+ ++ ++++ Lr +l  + k+++k
  Medtr5g046160.1 140 HELEEKKRVIDMTKSLAVLRNILTDL-KEKNK 170
                      7888*******************997.34444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087311.9E-592142IPR014842Transcription factor AFT
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGLKNLTAFY LSKQVCCLGC PFQLLRFKGL IVVAAARLVV DETFCVMSQI KSWERDDLLG  60
WVCQQVAKAE FTIFIDKSSL KKPTLTMQCE RNGEYKPPKT RKKSKRTGSR KCQCPFRLRG  120
FFEKDTNGWW IAMLSGIHHH ELEEKKRVID MTKSLAVLRN ILTDLKEKNK ESLTTIKQVY  180
NTQTRWHKGI IGDKTKIQYL ISKLEGHKYV YFARANSEET TLEDIYISHP ESINMLNTFP  240
TVLIMEASHH KYSSFILGIQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g046160.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9363260.0CR936326.2 Medicago truncatula chromosome 5 clone mte1-25j21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628739.12e-74protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7JWX60.0G7JWX6_MEDTR; Transcription factor AFT
STRINGAES971560.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]