PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g046790.1
Common NameMTR_5g046790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24672.3 Da    PI: 8.302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g046790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskR++g+lKKA+E+SvLCdaeva+iifs++gkl++ys+
  Medtr5g046790.1  9 KRIENKINRQVTFSKRKTGLLKKAKEISVLCDAEVALIIFSHNGKLFDYST 59
                     79***********************************************96 PP
2K-box108.95.5e-36831749100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ ++e+++ e+++Lk+++e Lqr++Rh++Ge+L+s+slkeLq LeqqL+++lk+iR++K+++++e i+elqkkek +qe+n++L+k+++e
  Medtr5g046790.1  83 NDTDTQENWTMEYTRLKAKVELLQRNHRHYMGEELDSMSLKELQCLEQQLDTGLKNIRTRKTQVMYEAISELQKKEKGIQEQNNMLSKEIKE 174
                      5677899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
CDDcd002651.00E-38273No hitNo description
SuperFamilySSF554553.79E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-3184172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.12988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRSKVQLKR IENKINRQVT FSKRKTGLLK KAKEISVLCD AEVALIIFSH NGKLFDYSTD  60
SCMEQILERH ERYGYAERLL VGNDTDTQEN WTMEYTRLKA KVELLQRNHR HYMGEELDSM  120
SLKELQCLEQ QLDTGLKNIR TRKTQVMYEA ISELQKKEKG IQEQNNMLSK EIKEKEKVVA  180
QEAAAQWEQP NYRVDTCFLL QDPLLPGLNM G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20174173MEF2C
5f28_B1e-20174173MEF2C
5f28_C1e-20174173MEF2C
5f28_D1e-20174173MEF2C
6byy_A1e-20174173MEF2 CHIMERA
6byy_B1e-20174173MEF2 CHIMERA
6byy_C1e-20174173MEF2 CHIMERA
6byy_D1e-20174173MEF2 CHIMERA
6bz1_A1e-20174173MEF2 CHIMERA
6bz1_B1e-20174173MEF2 CHIMERA
6bz1_C1e-20174173MEF2 CHIMERA
6bz1_D1e-20174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g046790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0517450.0BT051745.1 Medicago truncatula clone MTYF5_F6_F7_F81G-O-5 unknown mRNA.
GenBankBT1491430.0BT149143.1 Medicago truncatula clone JCVI-FLMt-16M7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614234.31e-155truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-106AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLG7JX121e-155G7JX12_MEDTR; MADS-box transcription factor
STRINGAES971921e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]