PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g047190.1
Common NameMTR_5g047190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 99aa    MW: 11536.2 Da    PI: 11.1377
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g047190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.21.9e-171929102
                      HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHH......HHHHHH.TTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSF......vRQLnm.YgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      ++ed+ ++++isws+ng+sf+++++ ++ak+ Lp+yFkh+nf+S        R + +  gF+kv++e+         weF++++F k +  l++
  Medtr5g047190.1   1 MVEDSLIDSIISWSANGRSFIISNSFDLAKDSLPRYFKHNNFSSGrlirlvRRGMRTgQGFRKVDSEK---------WEFANNNFVKVQPYLMK 85 
                      899*****************************************666555445565535888888877.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+++ks
  Medtr5g047190.1  86 NIHMQKS 92 
                      ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004474.1E-14188IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-16188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-16190IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-18188IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MVEDSLIDSI ISWSANGRSF IISNSFDLAK DSLPRYFKHN NFSSGRLIRL VRRGMRTGQG  60
FRKVDSEKWE FANNNFVKVQ PYLMKNIHMQ KSFHRHSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g047190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4590405e-67CU459040.2 Medicago truncatula chromosome 5 clone mte1-1e23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485934.17e-30heat stress transcription factor A-4a
TrEMBLG7JY569e-66G7JY56_MEDTR; Heat shock transcription factor
STRINGAES972151e-66(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-26HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]