PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g049190.1
Common NameMTR_5g049190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 243aa    MW: 28246 Da    PI: 6.7719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g049190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191965148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw ++l
  Medtr5g049190.1 19 KGQWTLEEDRLLINLVEQYGLRKWTDIAQKLP-GRMGKQCRERWINHL 65
                     799*****************************.************996 PP
2Myb_DNA-binding56.94.7e-1873113345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eE+++l +a+++lG++ W +Ia++++ gRt++++k++w+
  Medtr5g049190.1  73 IWSEEEEKILMKAHEELGNK-WVKIAKRLP-GRTENSIKNHWY 113
                      6*******************.*********.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.5721469IPR017930Myb domain
SuperFamilySSF466894.03E-3216112IPR009057Homeodomain-like
SMARTSM007173.8E-171867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-282072IPR009057Homeodomain-like
CDDcd001673.91E-152265No hitNo description
PfamPF139213.9E-182279No hitNo description
SMARTSM007173.9E-1670118IPR001005SANT/Myb domain
PROSITE profilePS5129419.91770120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2173119IPR009057Homeodomain-like
CDDcd001671.00E-1274116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSYCKRVGMT RNNKSNIVKG QWTLEEDRLL INLVEQYGLR KWTDIAQKLP GRMGKQCRER  60
WINHLRPDIK KDIWSEEEEK ILMKAHEELG NKWVKIAKRL PGRTENSIKN HWYATKRREY  120
SKRNYPSGST LLQEYIKSLN LDKNPPKEYT RKSSTKASDS EYLLTNQSTI SAQSQKANDS  180
QCLLSSGDFE DDILDICFDD NLFQDGCSID SLLDDMQIVE DTMLGVDVKK ELDLIEFFYS  240
GQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40161194107B-MYB
1gv2_A1e-40171192104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40171192104C-Myb DNA-Binding Domain
1msf_C1e-40171192104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g049190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453883.11e-180transcription factor MYB98
SwissprotQ9S7L25e-69MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A072UDS41e-179A0A072UDS4_MEDTR; Transcription factor MYB98
STRINGAES715031e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-71myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]