PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g054900.1
Common NameMTR_5g054900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 435aa    MW: 48672.5 Da    PI: 6.7346
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g054900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10147183338
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvkeL 38 
                      + k  rr+++NReAAr+sR+RKka++++Le  +vk +
  Medtr5g054900.1 147 DHKTLRRLAQNREAARKSRLRKKAYVQQLESsRVKLM 183
                      67899************************97244433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-6145208IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151147191IPR004827Basic-leucine zipper domain
PfamPF001707.4E-8148184IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-7149191No hitNo description
CDDcd147081.29E-22149200No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-7150191No hitNo description
PROSITE patternPS000360152167IPR004827Basic-leucine zipper domain
PfamPF141443.8E-25232306IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRFSDIGDFH HSSPFFPQQD VVDLTSNCMF SSVKSNNVVI GGSNMQYGTT INMNVGSAEI  60
ASNGAGCSDA GLQQHQQQHQ LMYNKGIASL PLGNCHVENW ADSGVADNNS QQTDDTSTDI  120
DIDTDDKHQS NGGNAHSNNQ TKFRAEDHKT LRRLAQNREA ARKSRLRKKA YVQQLESSRV  180
KLMQLEQELQ RVREQGMFIA NPGDQGHSSV GNGALAFDME YTHWVDEHQR MLNDLRSALN  240
SQMGDNELHL LVDGVMSHHN ELFRLKSIGA KTDVFHMLYG LWKTPVERFF IWHGAFRSSE  300
ILKIVKNHLE PLTENQLMGI CSLQQSTQQA EDALSHGMEA LKQSLLETLS STPSVSGTGS  360
GNVSDYMGQM AFAMNKLASL EDFLHKADLL KQETLQQLQR ILTTRQTARA LLVRNDYISR  420
LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g054900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023321e-150CU302332.2 Medicago truncatula chromosome 5 clone mth2-139e15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614511.20.0transcription factor TGA2.3 isoform X1
SwissprotQ415581e-149HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLG7JZC40.0G7JZC4_MEDTR; BZIP family transcription factor
STRINGAES974690.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-105bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]