PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g055260.1
Common NameMTR_5g055260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 256aa    MW: 29677.8 Da    PI: 8.1457
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g055260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.52.1e-111651942655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kA Pk il+ ++++gL+  hv+SHLQkYR 
  Medtr5g055260.1 165 KAKPKVILKRIDIHGLSAGHVASHLQKYRN 194
                      89***************************6 PP
2Response_reg38.94.6e-141690178
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE CS
     Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvt 78
                     v+ +d + ++++ +++++++ +y +v+ + +++eal+ll++kd +D++l+D  mp+md+++++++ + +  ++p+i  +
  Medtr5g055260.1 16 VIAIDHDTTFLNTIEEMCNRCHY-QVTKCNTASEALNLLERKDcFDVMLIDAHMPNMDAYDFVQHATGQL-NIPVI--S 90
                     567899999**************.**************************************98755432.44444..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.4E-2012134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.2E-2113133No hitNo description
SMARTSM004484.1E-514118IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.62115122IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-916112IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.29E-1119122No hitNo description
TIGRFAMsTIGR015571.2E-7164194IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-9165198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAVFIDNPSF PDGLNVIAID HDTTFLNTIE EMCNRCHYQV TKCNTASEAL NLLERKDCFD  60
VMLIDAHMPN MDAYDFVQHA TGQLNIPVIS NSVTKSITYG ACEYWTKPLY EEQFKIMWQH  120
VARKGLRENK KHKSVGSLDV QGHRKRERDD DNVPNVKKPR LMQFKAKPKV ILKRIDIHGL  180
SAGHVASHLQ KYRNYLKRSI DEKKCGKKKS KPSDDFEAQR IDRNQHDDVQ DEWIDQDESY  240
PRKKVMEERE GNIMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g055260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023481e-119CU302348.1 Medicago truncatula chromosome 5 clone mth2-45a24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455011.11e-104two-component response regulator ARR14
TrEMBLG7JZF60.0G7JZF6_MEDTR; Response regulator receiver domain protein
STRINGAES975010.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.26e-37response regulator 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]