PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g056450.1
Common NameMTR_5g056450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 159aa    MW: 18277.7 Da    PI: 8.1206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g056450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-061838323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C++ F++  +L +Hi +H
  Medtr5g056450.1 18 CKYCNRFFRNTQTLITHIESH 38
                     ******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2451643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAGEFSNIRH DVSNLVGCKY CNRFFRNTQT LITHIESHME YEEAAIRKLY STEHINPKRQ  60
FHPQCLPPHD GKIFQPKPTV IRPQPSKNPF FGHVGYRQMQ LPPHVNQSKH LEGESSNDGT  120
KAYIKQLEKP IKKIDFIDLV NNDDDNPDVN TLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g056450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356040.0AC135604.29 Medicago truncatula clone mth2-32p10, complete sequence.
GenBankFP0172050.0FP017205.3 Medicago truncatula chromosome 5 clone mte1-4m19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7K1J41e-114G7K1J4_MEDTR; Putative transcription factor C2H2 family
STRINGAES975881e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1527958
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]