PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g060770.1
Common NameMTR_5g060770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 357aa    MW: 39513.9 Da    PI: 5.0448
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g060770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-1162141389
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      k+lt+  + +++ + ++ ++a+ +  +++ e+s+ ++++d+++++W  ++   k+s    l++GW++F k+++L ++D+vvF+  ++s+
  Medtr5g060770.1  62 KTLTT--TETKSVFNISHECADLIfpKLDLEKSQIIIVTDLKSQEWGCTY--VKNS---RLRTGWSHFRKEKKLVAKDSVVFM--KNSS 141
                      55533..3344457788888866699666678899***************..7776...39**********************..4444 PP
2Auxin_resp21.59.9e-09148217382
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl....sGtvvgvsdldpvrWpnSkWrsL 82 
                      + a++++ FevvY+P +           v +a+k+ +  GmR+k+ + +++ss+ ++     Gt++ v +++    +  +Wr L
  Medtr5g060770.1 148 EFADKNMEFEVVYYPTV-----------VDDAMKIGWESGMRVKLTLKKDESSNSKTyyhpKGTISTVFNYS---CNVPNWRIL 217
                      56777888888888885...........789********************999887678889999988844...466678877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1157140IPR015300DNA-binding pseudobarrel domain
CDDcd100175.57E-759136No hitNo description
Gene3DG3DSA:2.40.330.103.3E-1359142IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00261153IPR003340B3 DNA binding domain
PfamPF023629.0E-874142IPR003340B3 DNA binding domain
PfamPF065071.2E-5146217IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPSCNILPCI ISAVNLFVDA LTDEVFAKLL LTPLTAQEPP PPPPVVPGQE DDDGNNLVSY  60
FKTLTTTETK SVFNISHECA DLIFPKLDLE KSQIIIVTDL KSQEWGCTYV KNSRLRTGWS  120
HFRKEKKLVA KDSVVFMKNS SAVLNAVEFA DKNMEFEVVY YPTVVDDAMK IGWESGMRVK  180
LTLKKDESSN SKTYYHPKGT ISTVFNYSCN VPNWRILEDG SKILQNTNIF NPWLVEACNM  240
TALDHAQYSS PQQIPYSSPP ITVPQLPPPP PASPFIAMPE LPNSTMGSLN QTWLDSDTFS  300
AGMQGARHDH LSVSDDLLPQ LTGQQVRNAN FGCVRVHPYE ITSDAHGGLE GLSFSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-11114564219Auxin response factor 1
4ldw_A2e-11114564219Auxin response factor 1
4ldw_B2e-11114564219Auxin response factor 1
4ldy_A2e-11114564219Auxin response factor 1
4ldy_B2e-11114564219Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g060770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640646.16e-95auxin response factor 17
TrEMBLG7K9Z00.0G7K9Z0_MEDTR; Auxin response factor
STRINGAES978390.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-23auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]