PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g060950.1
Common NameMTR_5g060950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 359aa    MW: 40737.3 Da    PI: 6.6369
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g060950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.2e-116795533
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                     k+ rr ++NR AAr++R+RKka++++Le+
  Medtr5g060950.1 67 KVLRRQAQNRAAARKCRLRKKAYVQQLET 95
                     789************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-762100No hitNo description
SMARTSM003380.00363123IPR004827Basic-leucine zipper domain
PfamPF001703.7E-86796IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-76998No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
PfamPF141441.4E-26155228IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNMYEPFLQV SIWEDSFKVD HSTLNSIASP MLKMNITSME NKSECIPQES REPSGDDQET  60
IQEPVPKVLR RQAQNRAAAR KCRLRKKAYV QQLETSRLKL MQLELDIEKT RKQGLYKSSL  120
SDVGYMGSSG TINSGISLFE IEYGRWIEEQ DRQNEELRNA LQTNASDIQL HLLVESSLNQ  180
YSNLFRMKAE AAKADVFYLI SGVWKSPVER LFLWIGGSRP SQILNIVVPK LENLNDQQIA  240
SINNLRLSSQ QAEDALSIGL EKLQQSMINN IQADPLDFGN YGFQMAAAID KGEAVEGFVI  300
QADHLRQQTL LYMSRILSIG QAAQGLLAMG EYFHRLRTLS SLWTARSCHH FYPTQHSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.112910.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g060950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614897.20.0transcription factor TGA3 isoform X2
SwissprotQ392341e-120TGA3_ARATH; Transcription factor TGA3
TrEMBLG7K9330.0G7K933_MEDTR; BZIP family transcription factor
STRINGAES978550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.11e-109TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  6. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]