PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g061220.1
Common NameMTR_5g061220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 529aa    MW: 58546.4 Da    PI: 6.8389
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g061220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-21118219199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt+sd+++ g +++p+ +a+ +      + ++  s++l+++d + r+W++ + yr++++r+++t+GW  Fv+ ++L +gD++vF+  +++
  Medtr5g061220.1 118 FVKTLTKSDSNNGGGFSVPRICADLIfpkldlN-SPFPSQQLSVTDVHDRVWKFAHVYRGRPKRHLFTTGWTPFVNTKKLVAGDSIVFM--KNT 208
                      89*********************888**99752.2234568************************************************..679 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                       +  vv+++r+
  Medtr5g061220.1 209 AGDIVVGIRRN 219
                      9999****996 PP
2Auxin_resp54.16.7e-19266349179
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkW 79 
                      a++ a+++ +Fev+Y+Pra + +Fvv ++ v +a+k+ ++ GmR+k+ +  ++ss+ ++     +Gt++ vs + + r  + +W
  Medtr5g061220.1 266 AVELAEKNLAFEVIYYPRANWCNFVVDANVVDDAMKIGWASGMRVKLPLKIDESSNSKMtffqpQGTISNVSSVPNWRMLQVNW 349
                      6788999***********************************************99887778889*******987766666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-24113218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-29113219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-17117218No hitNo description
PfamPF023621.0E-18118219IPR003340B3 DNA binding domain
SMARTSM010198.0E-18118220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.519118220IPR003340B3 DNA binding domain
PfamPF065071.4E-15266351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSPPATMSV PPPRRVKSKI WQTCAGPSVN VPKVRSKVYY FPHGHLEHAC PSPNPQTITV  60
IDGYGPSFPC IITAVDLLAD PHTDEVFAKL LLSPVTEGQE FPEVVDEEDD GGDKFVSFVK  120
TLTKSDSNNG GGFSVPRICA DLIFPKLDLN SPFPSQQLSV TDVHDRVWKF AHVYRGRPKR  180
HLFTTGWTPF VNTKKLVAGD SIVFMKNTAG DIVVGIRRNI KFAAAETKAV NNKKEEGKEN  240
GLEVKREGFS RGGRRGMLTE KAVIEAVELA EKNLAFEVIY YPRANWCNFV VDANVVDDAM  300
KIGWASGMRV KLPLKIDESS NSKMTFFQPQ GTISNVSSVP NWRMLQVNWD ELEILQNQNR  360
VNPWQVELIS HTPAVHLPFL STKKPRLVQD SALFCDDKGD PFIPMIEFPK RSLNQTLLNC  420
GYFPAGMQGA RHDHLSLSGF SNSLNDNSYS FFVNNLNIDM PTTNDLSPNN LDSLNTFETD  480
FVETHNSNIK GVGSGSIKLF GKIIKPVESD VHDSGTKGED SSKGSNEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-551636751388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g061220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP7001590.0FP700159.1 Medicago truncatula chromosome 5 clone mth2-108p14, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614915.20.0auxin response factor 17
TrEMBLG7K9510.0G7K951_MEDTR; Auxin response factor
STRINGAES978730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-112auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]