PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g061890.1
Common NameMTR_5g061890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 400aa    MW: 44143.9 Da    PI: 6.1769
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g061890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11114205399
                      EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      k+lt+sd ++   l++p ++ + +    +++  +s+ +t++d+++++   +++y+++s    l +GW +Fv++++L ++D+vvF   ++s ++ 
  Medtr5g061890.1 114 KTLTQSDCTRV--LCVPIECSNLIfpklDLD--KSQSITVTDLKNQERGYTYTYSNSS---RLHTGWLNFVREKKLVANDSVVFI--KNSAGKI 198
                      67766666654..777877764448866666..5556999999999988888778887...4899********************..779**** PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                       v+++rk
  Medtr5g061890.1 199 SVGIRRK 205
                      *****98 PP
2Auxin_resp454.5e-16229314183
       Auxin_resp   1 aahaastksvFevvYnPras.tseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++F+vvY+P as + +Fvv ++ v +a+k+ +  GmR+k+ + + +ss+ ++      Gt++ v + ++   +  +Wr+L+
  Medtr5g061890.1 229 AAELAEKNTAFDVVYYPTASgWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSNSKMtisqlKGTISFVYNHSS---NVPNWRMLE 314
                      688999***********986489*************************99888888776543345677766666333...556799985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-16108206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.614110206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17111207IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-10111204No hitNo description
SMARTSM010191.4E-4112206IPR003340B3 DNA binding domain
PfamPF023621.8E-8113205IPR003340B3 DNA binding domain
PfamPF065072.5E-13229313IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSLPLPPRVD PKIWQICAGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS  60
IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD  120
CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQERGYT YTYSNSSRLH TGWLNFVREK  180
KLVANDSVVF IKNSAGKISV GIRRKTKFTT DEADEGSENL TDEIKVLDAA ELAEKNTAFD  240
VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV  300
YNHSSNVPNW RMLEVNWDGL DIPQNPNLVN PWQVEVYNIP APSTSSSTVN NPRLAESSSP  360
QQIPHSMAGS SGPMSQAPSE VSSSAYPCNI GMQSQLGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-411233822356Auxin response factor 1
4ldy_B4e-411233822356Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g061890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640656.10.0auxin response factor 17
TrEMBLG7KA250.0G7KA25_MEDTR; Auxin response factor
STRINGAES979270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.16e-60auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]