PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g064950.1
Common NameMTR_5g064950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 301aa    MW: 33926.4 Da    PI: 7.326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g064950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-1498149155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ L++l+P++   + ++ + a+i+  A++++k+Lq
  Medtr5g064950.1  98 QRMTHIAVERNRRKQMNEYLDILKSLMPPS---YVQRGDQASIVGGAINFLKELQ 149
                      79****************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-1396153No hitNo description
Gene3DG3DSA:4.10.280.107.6E-1396152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1797171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.56197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-1298149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYGCLTK DEEDLFGIIS NNLDHNILSN WDSSSPSNIK EQWNSHSSPE  60
TSTLPPSTFE ATTTITAPRR RKRRHTVNAK NKEEIESQRM THIAVERNRR KQMNEYLDIL  120
KSLMPPSYVQ RGDQASIVGG AINFLKELQQ HLQFMKGQKK INKEAHENSF ISCSCSSQPL  180
TEFFMFPQYS MDARQNITCY PTKHNQSRAM GDIEVTLVDS HANIKIMLKK RQGQVMKMVA  240
GIQNLGFNIL HLNVSSMDDN VLVSVSAKVE EGSRLNTVDE IAAAVNELSH RIQVEAAAWT  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781PRRRK
298109RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g064950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9288580.0CU928858.2 Medicago truncatula chromosome 5 clone mth4-5i12, COMPLETE SEQUENCE.
GenBankFP0161590.0FP016159.1 Medicago truncatula chromosome 5 clone mth2-188h20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615193.20.0transcription factor bHLH96
SwissprotQ9C7T47e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLG7KAJ70.0G7KAJ7_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES981510.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]