PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g066080.1
Common NameMTR_5g066080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 254aa    MW: 28528.3 Da    PI: 6.9921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g066080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-133885254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +++h e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++k L
  Medtr5g066080.1 38 CKSHREAERRRRQRINAHLNTLRSLLPNT-----TKSDKASLLAEVVQHVKRL 85
                     789*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9233685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-113885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-143996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-144098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-124291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.3E-6145218No hitNo description
CDDcd048731.44E-5147211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLPPLRRFYG FESWMDNKEL EEINCDKSKS ERKSKEACKS HREAERRRRQ RINAHLNTLR  60
SLLPNTTKSD KASLLAEVVQ HVKRLKKEAD EMANRHNDGE SSSSCSGEPG SVNSTEVVET  120
WPFPGESDEA TVSYCGKEEG EPRRMKVTVC CEERPGLNHD LTQAIRSVLA KPVRAEMMTV  180
GGRTKTVVVV EWPNGEGGDD VREEKVVEAL ERGLKAVIEN RAFVDSGMGP ILLGRKRARE  240
VECSLLLRNE DFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g066080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1799200.0CU179920.2 Medicago truncatula chromosome 5 clone mth4-25c2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615282.10.0transcription factor bHLH30
TrEMBLG7KBK50.0G7KBK5_MEDTR; Putative transcription factor bHLH family
STRINGAES982400.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-23basic helix-loop-helix 32
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]