PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g066510.1
Common NameMTR_5g066510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 287aa    MW: 31424.8 Da    PI: 5.6266
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g066510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.4e-18203239135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Medtr5g066510.1 203 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGV 239
                      *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.52268103IPR010399Tify domain
SMARTSM009794.9E-1068103IPR010399Tify domain
PfamPF062001.5E-1171102IPR010399Tify domain
PROSITE profilePS5101712.967135177IPR010402CCT domain
PfamPF062031.0E-15135177IPR010402CCT domain
PROSITE profilePS5011410.976197253IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-16197250IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-13199254No hitNo description
Gene3DG3DSA:3.30.50.107.4E-17201244IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.27E-16202246No hitNo description
PfamPF003201.5E-15203239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEPPMYDHSQ PLNTTVPITA GESDDGSGPD AGVDAQHQIQ YETHGMDDSN SDAVYGNGSE  60
NPEFALQSFD ESDQLTLSFR GQVYVFDSVT PAKVQSVLLL LGGCEQPNVG VNAVPQQSLR  120
VESMDFPTKY SQLHREASLL RFRQKRKERC FDKKVRYEVR QEVALRMQRK KGQFTTSKKQ  180
DGSNSCGTDQ DSSQDASPSE ISCTHCGTSS KSTPMMRRGP SGPRSLCNAC GLFWANRGVL  240
RDLSKRHQEL STVPVEQVDQ GNSSDCGTAT IPAHNITPIE QPSTIC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.36240.0root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g066510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376631e-156CU137663.1 Medicago truncatula chromosome 5 clone mth2-164g23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615317.10.0GATA transcription factor 25
SwissprotQ9LRH63e-73GAT25_ARATH; GATA transcription factor 25
TrEMBLG7JYF50.0G7JYF5_MEDTR; GATA transcription factor
STRINGAES982750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]