PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g067680.1
Common NameMTR_5g067680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 358aa    MW: 39845.9 Da    PI: 6.1521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g067680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92.1e-28202262259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqKe+ g ++prsYYrCt++    Cp+kk+v+r +e+p++ve+tY+geH ++
  Medtr5g067680.1 202 EDGFTWRKYGQKEILGRKHPRSYYRCTHQklyLCPAKKQVQRLDENPNIVEVTYRGEHICH 262
                      7****************************8888*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-27196262IPR003657WRKY domain
SuperFamilySSF1182902.09E-24198262IPR003657WRKY domain
SMARTSM007741.8E-36201263IPR003657WRKY domain
PfamPF031061.0E-25202262IPR003657WRKY domain
PROSITE profilePS5081120.231202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEVMNFIMR AFELAKNLEL ELPNITNHPE MLFSSIDEVE KAFNAAKERV MMMLSSQHDT  60
TTTTKPSNSF AQIPSHDVFM QKTQHAQIGG SGSAISMHAH SMDQLLLIQH PFDVSVLLEN  120
KMISGGGDVH LLRSRGTLRI GEMGGGRDVE GLDRSKGIEG DQMQGIETPP SRPKKCSRKN  180
DLEKRTEMYP APQIGNTEMP PEDGFTWRKY GQKEILGRKH PRSYYRCTHQ KLYLCPAKKQ  240
VQRLDENPNI VEVTYRGEHI CHKSLTAPSS YPPPPNLLVN ISTIETAISS QGWPPVVNHD  300
LRDGDGSGGP SNSRFGIDYP VADMADVMFN SGSSSGNSME SLFYITEDKG EPDEEKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-20202261968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g067680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0097490.0CT009749.1 Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615413.10.0WRKY transcription factor 55 isoform X1
TrEMBLG7K6410.0G7K641_MEDTR; WRKY family transcription factor
STRINGAES983710.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-52WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]