PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g070810.1
Common NameMTR_5g070810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 117aa    MW: 13570.7 Da    PI: 10.392
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g070810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.4e-071795991
             FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                     ++GF++ ++ks+ +         t +C  +g+ ++ k++++ + + + + + +C  +l+   +k ++ w ++ l   HnHelap
  Medtr5g070810.1 17 RAGFTIFIDKSSLK-----RSYLTTQCESSGEYKPPKTRKKPNLEDTGSRKWECSLRLQGFFDKdTKDWWIAMLCGMHNHELAP 95
                     68999999887766.....3456889*********999989999999***********977666699***************86 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MERPRRFTWL GWPQVARAGF TIFIDKSSLK RSYLTTQCES SGEYKPPKTR KKPNLEDTGS  60
RKWECSLRLQ GFFDKDTKDW WIAMLCGMHN HELAPKLDGH LLAGRLKAEE KKRLST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g070810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022230.0FP102223.2 Medicago truncatula chromosome 5 clone mte1-4k3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628739.17e-30protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7KE857e-81G7KE85_MEDTR; FAR1 DNA-binding domain protein
STRINGAES986291e-81(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]