PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g071590.1

Common Name

MTR_5g071590

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 189aa MW: 21546.4 Da PI: 7.8418

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g071590.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.1	2.9e-18	62	169	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY +YA+++GFs+r+ ++k+ k++++i ++vC+k+g+++ + + + + ++++e+r+gCka + +k+++ +++ Medtr5g071590.1 62 DFYGNYAYNTGFSIRTMLKSKNnsqnKKSEKIHYLRYVCNKQGYKKGSLLNpnnrptsdsplviEFVKVKEKPEERVGCKAGIYLKLDEvLNVY 155 6***********98655555455699999***********998888999999999999888999***************99* PP FAR1 77 evtkleleHnHela 90 ++++ + H H+l Medtr5g071590.1 156 KIYRWDVAHCHPLH 169 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-15	62	169	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MDLISTSSES GQLSVEASSL IHAESGQLSV ETSSMIHTEC YSPSNEESWK SLVFQSIKEV 60 EDFYGNYAYN TGFSIRTMLK SKNNSQNKKS EKIHYLRYVC NKQGYKKGSL LNPNNRPTSD 120 SPLVIEFVKV KEKPEERVGC KAGIYLKLDE VLNVYKIYRW DVAHCHPLHK PEHLCYLRPL 180 EPCTNNNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g071590.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT963106	0.0	CT963106.2 Medicago truncatula chromosome 5 clone mth2-64o22, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626515.1	1e-119	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7JZL9	1e-137	G7JZL9_MEDTR; FAR1 DNA-binding domain protein
STRING	AES98688	1e-138	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Link Out ? help Back to Top
Phytozome	Medtr5g071590.1
Entrez Gene	11416564

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]