PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g075020.1

Common Name

MTR_5g075020

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 235aa MW: 25263.8 Da PI: 8.1201

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g075020.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.4e-41	47	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdPvyG++g i++lqqq+++l+ael Medtr5g075020.1 47 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAEL 140 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Medtr5g075020.1 141 HAVRTE 146 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	46	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	47	144	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MFGCPETVAE RLDEIAKINS EGETSSQMGR KHLYGPTSGT TLNTVTPCAA CKLLRRRCAE 60 ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLLEVPEGQR ADAANSMVYE ANLRLRDPVY 120 GCMGAISSLQ QQVQSLQAEL HAVRTELLKY KYREAASFIS SQVSMPTSAN SQPLPLPTTL 180 APPSPAPPPP QKVLASQSII LSSLSSSSTS SVYTPPKTTM SHGSISSENI PYFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	40	154	4	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	40	154	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.25539	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g075020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143889	0.0	BT143889.1 Medicago truncatula clone JCVI-FLMt-13L16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003615999.1	1e-171	LOB domain-containing protein 13 isoform X1
Swissprot	Q9AT61	1e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	G7KFM6	1e-170	G7KFM6_MEDTR; LOB domain protein
STRING	AES98957	1e-171	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	9e-67	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Medtr5g075020.1
Entrez Gene	11433115

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]