PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g075390.1

Common Name

MTR_5g075390

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 359aa MW: 39363.5 Da PI: 6.7297

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g075390.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	161	213	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ Medtr5g075390.1 161 KRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTT 213 9*****************************************99988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-16	157	221	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.588	159	222	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-9	161	216	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	161	215	No hit	No description
SuperFamily	SSF57959	1.41E-10	161	212	No hit	No description
CDD	cd14703	1.09E-24	162	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MQHQSSNPNP NSNPNRHNAS QLPPPPPPST AAATTAKPSL FPRTTNVPSH HRRAHSDLTF 60 RLPDDMMDLS PSDPFTGGSS TASLDEIGSE DDLFSTYIDM DKLGDGGADP GGNDEGEKNP 120 VRSRHRHSNS VDGSSSFGEI MDGKKAMPPD KLAELWSVDP KRAKRILANR QSAARSKERK 180 ARYIHELERK VQTLQTEATT LSAQLTLYQR DTTGLSTENT ELKLRLQAME QQAHLRDALN 240 DALKKEVERL KVATGDIMSH TESFNLGMHQ MQFTESDYAP IPPQGPSGHR NIRLPLFGHS 300 PSSMPSHQLH QTNSHSYSEL LQNDQIGRFQ GLDISSKGTA VVKSEDPSLS ASESSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MQHQSSNPNP NSNPNRHNAS QLPPPPPPST AAATTAKPSL FPRTTNVPSH HRRAHSDLTF  60
RLPDDMMDLS PSDPFTGGSS TASLDEIGSE DDLFSTYIDM DKLGDGGADP GGNDEGEKNP  120
VRSRHRHSNS VDGSSSFGEI MDGKKAMPPD KLAELWSVDP KRAKRILANR QSAARSKERK  180
ARYIHELERK VQTLQTEATT LSAQLTLYQR DTTGLSTENT ELKLRLQAME QQAHLRDALN  240
DALKKEVERL KVATGDIMSH TESFNLGMHQ MQFTESDYAP IPPQGPSGHR NIRLPLFGHS  300
PSSMPSHQLH QTNSHSYSEL LQNDQIGRFQ GLDISSKGTA VVKSEDPSLS ASESSTTF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.24250	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g075390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC141923	0.0	AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616032.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-100	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	G7K0T5	0.0	G7K0T5_MEDTR; BZIP transcription factor
STRING	AES98990	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-92	bZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr5g075390.1
Entrez Gene	11433119

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]