PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g075790.1
Common NameMTR_5g075790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 225aa    MW: 26070.2 Da    PI: 7.4985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g075790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-16114157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eE+ l++++++ + +g+Wk I++++  +Rt+ q+ s+ qk+
  Medtr5g075790.1 114 HWTEEEHRLFLEGIEIHKKGNWKMISQHVR-TRTASQVASHAQKH 157
                      5*****************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0751468IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-51469IPR009057Homeodomain-like
SMARTSM007170.0121870IPR001005SANT/Myb domain
SuperFamilySSF466897.58E-72075IPR009057Homeodomain-like
CDDcd001671.45E-42168No hitNo description
Gene3DG3DSA:1.10.10.607.5E-11107160IPR009057Homeodomain-like
PROSITE profilePS5129418.381107162IPR017930Myb domain
SMARTSM007179.4E-10111160IPR001005SANT/Myb domain
SuperFamilySSF466894.71E-15113161IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-11114161IPR006447Myb domain, plants
PfamPF002491.7E-13114157IPR001005SANT/Myb domain
CDDcd001674.42E-11115158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MYQSSYQHMN HTNNNDGKSK EWTWDENKIF ETILFEYLEE VQEGRWENIG LVCGRSSTEV  60
KEHYETLLHD LALIEEGLVD FSTNSDDFIS KASIDEKKDP PTKNKTKKVV SVKHWTEEEH  120
RLFLEGIEIH KKGNWKMISQ HVRTRTASQV ASHAQKHFLH QLDGTSKKTY KKRSNFYITS  180
LKGNSKPLLN KDNIPSPSTS WDGNFHPLLY KDNYVPALPS PHLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g075790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468420.0AC146842.9 Medicago truncatula clone mth2-10a3, complete sequence.
GenBankAC1496000.0AC149600.8 Medicago truncatula strain A17 clone mte1-41j24, complete sequence.
GenBankCU4590320.0CU459032.2 Medicago truncatula chromosome 5 clone mth4-20f20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616071.21e-167transcription factor DIVARICATA
TrEMBLG7K5U81e-165G7K5U8_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGAES990291e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2055925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-24MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]