PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g076070.1
Common NameMTR_5g076070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 284aa    MW: 32783.4 Da    PI: 5.6256
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g076070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.7e-2168156289
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                      fYn Y+ + GF  rks+  ++  +gei+++tf C +eg+r+e++++ ++++r+ ++ +r+gC+ak++v+ +  +g+w+++ ++  HnH++
  Medtr5g076070.1  68 FYNWYGCSHGFAGRKSRVVRN-VKGEIVQQTFLCHREGNRSERNRNpDVQKRELKPISRCGCEAKIQVHIDFdSGRWYIKFFDDVHNHSF 156
                      9****************9999.8888*****************9998899999******************99***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1968156IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDIQEIINIF NAKNVSQVNE DCSEGLGGNN QSESDDCSSD ENEGNTEAET NNEGYGCNFD  60
SENVAFMFYN WYGCSHGFAG RKSRVVRNVK GEIVQQTFLC HREGNRSERN RNPDVQKREL  120
KPISRCGCEA KIQVHIDFDS GRWYIKFFDD VHNHSFLADK YEWMLPAHMK MTKYEKYQMN  180
TMRKYGIPTS WIYGYFATQA GGFENVGYTR RDMYNEQLKG TGSNSSNADC AIEFLKAMCA  240
RDDMMYWRHT VNQDGTLRHL FWCDGISRMD YSVFGDILAF QTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g076070.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263930.0CU326393.2 Medicago truncatula chromosome 5 clone mth4-5l6, COMPLETE SEQUENCE.
GenBankCU4590320.0CU459032.2 Medicago truncatula chromosome 5 clone mth4-20f20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616094.30.0protein FAR1-RELATED SEQUENCE 5
TrEMBLG7K5X10.0G7K5X1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES990520.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-24FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]