PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g076850.1
Common NameMTR_5g076850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 645aa    MW: 74164.4 Da    PI: 5.262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g076850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1812.9e-5661331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yL++k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v
  Medtr5g076850.1   6 LPPGFRFHPTDEELVAYYLNRKINGHKIEL-EIIAEVDLYKCEPWDLPgKsLLPGNDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKV 98 
                      79****************************.99***************6434555788************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s + ++vg+kktLv+y+grap+g++t+Wvmheyrl
  Medtr5g076850.1  99 NS-QARAVGVKKTLVYYRGRAPHGSRTNWVMHEYRL 133
                      **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-644156IPR003441NAC domain
PROSITE profilePS5100561.2776156IPR003441NAC domain
PfamPF023655.5E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLNRKING HKIELEIIAE VDLYKCEPWD LPGKSLLPGN  60
DMEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QARAVGVKKT LVYYRGRAPH  120
GSRTNWVMHE YRLDERECET TPSLQDAYAL CRVIKKSTVI VPKVGGQYGN ITSDQSPRVE  180
LYSERRGEDL DSSNYLMQMK DCSPHNMVNE TSLNINGTSR DHGNWLQFSS QDPLFSLPTS  240
SSFPNYGAIT YPPSKVDIAL ECARMQHRFA MPPLEVEEFP QVGIPHQTQQ GSRTRNDIMQ  300
GILSLTHASQ GLMNQSSYSQ ALDHNDNYAP YEDDFTFMVG TNYNHINDMS SMGYVDKTWE  360
DLNTRSIEIG DLEDQESKAN RVVENLRWIG MPREDFEKME EQNVVPIEDI SCYQTLREHN  420
GMQEYERHNN NVEQNDNDVD EFSWGFINDG DPNDNFIEDG NMDGYSNSPS FEIIEETKVS  480
HRMLVSTQQV AMTLFHQVVP SQTLQIQLNP MMPNNPNSKE NVDAIMMIME NQGSFFRKFK  540
AYVMGKWNLF NPSKEIASLV VFVFALLVMH RVYLEEEVEI CKPNPKNVKE KRMRESQERV  600
KWNESKEVWF VGVKCEKGLS VAFKEIGIFL TIFLALCTTW ASHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-58115815170NAC domain-containing protein 19
3swm_B4e-58115815170NAC domain-containing protein 19
3swm_C4e-58115815170NAC domain-containing protein 19
3swm_D4e-58115815170NAC domain-containing protein 19
3swp_A4e-58115815170NAC domain-containing protein 19
3swp_B4e-58115815170NAC domain-containing protein 19
3swp_C4e-58115815170NAC domain-containing protein 19
3swp_D4e-58115815170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121980.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g076850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616168.10.0NAC domain-containing protein 86
TrEMBLG7KFT90.0G7KFT9_MEDTR; NAC transcription factor-like protein
STRINGAES991260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-136NAC domain containing protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]