PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g079560.1
Common NameMTR_5g079560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 243aa    MW: 27131.1 Da    PI: 9.7467
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g079560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71.1e-09100179790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A ++GF+++++ks++      +   t++C ++g+ ++ k++++ + + +++ +++C  +lk   ek +++w ++ l   HnH+la
  Medtr5g079560.1 100 AARAGFTISTDKSST-----IVPYMTMQCERSGEYKPPKTRKKPKLEGTSSRKCNCPFRLKCFFEKkTQEWWIAMLCGVHNHDLA 179
                      889999999887655.....48999*************99989999999999******9999877779***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-6100179IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAEDGVEAKP GKNKASGVGV GSGEGKPTND VKFKVKIPFQ VEAHIVHNQA KPVPTGNFEE  60
KPKPVPTGVR IIQVNTGSFF TTNERWKDRE ELLGWIRQQA ARAGFTISTD KSSTIVPYMT  120
MQCERSGEYK PPKTRKKPKL EGTSSRKCNC PFRLKCFFEK KTQEWWIAML CGVHNHDLAS  180
NLSGRLCNLL GGWLCEDDYL ARFDEGTNET RNEKGVISNL KMTKGSKMAN AKLEKIQDTT  240
YI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g079560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5732160.0CT573216.1 Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KBN40.0G7KBN4_MEDTR; FAR1 DNA-binding domain protein
STRINGAES993370.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]