PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g080470.1

Common Name

MTR_5g080470

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 193aa MW: 21179.6 Da PI: 5.9986

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g080470.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.4	9.8e-38	7	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa+dCv+apyf eq +++f +vhk++Gasnv++ll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e Medtr5g080470.1 7 SCGACKFLRRKCASDCVFAPYFSYEQaSSHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEE 100 6*********************9978**************************************************************** PP DUF260 94 lallk 98 ++ l+ Medtr5g080470.1 101 IDILG 105 98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.423	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-36	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTGFGSSCGA CKFLRRKCAS DCVFAPYFSY EQASSHFSAV HKVYGASNVS RLLSHLPIQN 60 RSDAAITISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDILGSVMAN SSVSVVNCGN 120 VQAPMNSNNG TQYYHNQSFE SYLDMELIPN AHGFPEPLYG DSNSNPLEKF LSGIDQEGFL 180 NHPWFKHNNG DI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g080470.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC129090	1e-169	AC129090.23 Medicago truncatula clone mth2-14i8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616452.1	1e-143	LOB domain-containing protein 33
Swissprot	Q9LHS8	6e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	G7KGT3	1e-141	G7KGT3_MEDTR; LOB domain protein
STRING	AES99410	1e-142	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-55	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Medtr5g080470.1
Entrez Gene	11432238

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]