PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g080660.1
Common NameMTR_5g080660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 235aa    MW: 26967.6 Da    PI: 9.1536
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g080660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-054971123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  Medtr5g080660.1 49 YSCNFCKREFRSAQALGGHMNIH 71
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-64675No hitNo description
PfamPF139125.9E-64972IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1774976IPR007087Zinc finger, C2H2
SMARTSM003550.0084971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGSYSDQYW FWTKRRQVQA PIESWEEKAF AEDAARNILN GSMWPPRFYS CNFCKREFRS  60
AQALGGHMNI HRRDRARLKQ NLSPQKNNDL INSSLGNHYF SAKMSSKIDC NYHQLKPCSR  120
RRSLSPSRIV STIVNAREDN FLDCNDCVET SLSLGMFGQK SSTVLPCEEK GINCKRLKTN  180
NISSLPSVFL KTCSNDHHRF LAFQQPSEIV LGLDHGMEDL DLELRLGKQQ KIIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-124471229superman protein
2l1o_A7e-124471229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g080660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541910.0CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616466.21e-177probable transcriptional regulator RABBIT EARS
TrEMBLG7KGU71e-175G7KGU7_MEDTR; Putative transcription factor C2H2 family
STRINGAES994241e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-26C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]