PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g082140.1
Common NameMTR_5g082140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 461aa    MW: 51653.7 Da    PI: 6.9541
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g082140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.2e-15116219399
                      EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      k+lt+sd+++ g +++p ++a+ +       + +  s+ l ++d ++ +W+++++yr++++r+++t+ W++Fv+ +++  gD++v++ + ++ +
  Medtr5g082140.1 116 KTLTQSDANNGGAFSVPSECAKLIfppldlTS-PMPSQVLPIKDIHNFVWNFRHTYRGSPKRHLITTKWSKFVDTKKIIGGDSLVLMKIsKDkD 208
                      899******************888***98633.33456899**********************************************5537778 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + + +++++r+
  Medtr5g082140.1 209 KDKIFIGIRRH 219
                      88999999987 PP
2Auxin_resp591.9e-20235315183
       Auxin_resp   1 aahaastksvFevvYnPras.tseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev+Y+P as + +Fvv +e v+ka+++++  GmR+k  + t++ss+r+   +Gtv+++sd  p   ++ +Wr+L+
  Medtr5g082140.1 235 AAELADKNMTFEVIYYPTAShWCNFVVDAEAVKKAMQINWQSGMRVKHCLKTDESSKRSSifQGTVSALSD--P---SHHPWRMLQ 315
                      688999***********998359***********************************9889********9..5...345677775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.6E-8113220IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-20113207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.882114220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-22115210IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-12116200No hitNo description
PfamPF023622.2E-13116219IPR003340B3 DNA binding domain
PfamPF065072.1E-16235315IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDPQEPKRVD REIWQCLAGP SFKIPKLNSQ VFYFPLGHLE HACPSPNTEA LSLINSYRPI  60
IPCVVSDVDL LADLQTDEVF AKLILTPITN DSVHEPQEPE VRENEHGGDR LVFSGKTLTQ  120
SDANNGGAFS VPSECAKLIF PPLDLTSPMP SQVLPIKDIH NFVWNFRHTY RGSPKRHLIT  180
TKWSKFVDTK KIIGGDSLVL MKISKDKDKD KIFIGIRRHK LSAAAKITEK SVMEAAELAD  240
KNMTFEVIYY PTASHWCNFV VDAEAVKKAM QINWQSGMRV KHCLKTDESS KRSSIFQGTV  300
SALSDPSHHP WRMLQVNWDE SEVSQNPSQV SPWQIELISH TPALPLQFPP QKKLRIAHVS  360
ALSTNIERPS IPEIEFNFFN PASMNCDAFL NSMQGTRPNL FSASTSSTSL NDNDNGFVEG  420
THNLNTKKVN PRSIKLFGKT IEVVEKDLHE SRINGEDGSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-56933651388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g082140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695600.0CU469560.1 Medicago truncatula chromosome 5 clone mth4-3g17, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616592.10.0auxin response factor 17
TrEMBLG7KGW80.0G7KGW8_MEDTR; Auxin response factor
STRINGAES995500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-86auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]