PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g082910.1
Common NameMTR_5g082910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 289aa    MW: 32142.2 Da    PI: 8.4544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g082910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++ Ede lv++vk+ G ++W+ I+++++ gR++k+c++rw + 
  Medtr5g082910.1 19 KGSWSKTEDETLVKLVKENGARNWSVISNEIP-GRSGKSCRLRWCNQ 64
                     799*****************************.***********985 PP
2Myb_DNA-binding54.42.9e-1772115247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++T+ Ed ++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
  Medtr5g082910.1  72 LPFTPAEDSIIIEAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 115
                      69*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9721469IPR017930Myb domain
SuperFamilySSF466891.61E-2916112IPR009057Homeodomain-like
SMARTSM007175.5E-151867IPR001005SANT/Myb domain
PfamPF002493.1E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212072IPR009057Homeodomain-like
CDDcd001672.73E-142163No hitNo description
SMARTSM007177.9E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129420.3270120IPR017930Myb domain
CDDcd001678.42E-1273116No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2273119IPR009057Homeodomain-like
PfamPF002493.2E-1473115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MISENSNSNG GDENGDKVKG SWSKTEDETL VKLVKENGAR NWSVISNEIP GRSGKSCRLR  60
WCNQLSPTVQ HLPFTPAEDS IIIEAHAVHG NKWATISRLL PGRTDNAIKN HWNSTLRRRR  120
TAAPAAVPPV TTIVQRVPTA VPVTVIPTGV MIGKRVNESY DGDYYKDLLS LGTRYKRPCV  180
LVENNSGSRG SREGEETVTE DDDAGNKGVN VVRTSLSLFP PGFLKEEEER KEKQKEIEDF  240
EDSNDDLKLL KNEKLRSMLQ RMIAEEVRNY VDKMRLGGGL APDSTLRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-37161194107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g082910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447290.0AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616662.10.0transcriptional activator Myb
TrEMBLG7K2600.0G7K260_MEDTR; Myb transcription factor
STRINGAES996200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-47myb domain protein 77
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]