PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g083010.1

Common Name

MTR_5g083010

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 178aa MW: 19801.5 Da PI: 7.2432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g083010.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+re++++sl+yeA+ar+rdPvyG++g i lq+++ +l+++l Medtr5g083010.1 11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMVELQHDL 104 6********************************************************************************************* PP DUF260 95 allkee 100 a +k++ Medtr5g083010.1 105 AIAKDR 110 999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.331	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP 60 EEQREETVNS LAYEADARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCAAAAAT 120 PTSSFSNDMM NSNVSLPPFP EFFTCSDFSD NLSHSSSSQS FTRNETVDDF VQIPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	6	123	6	125	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	6	123	6	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g083010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144729	0.0	AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616672.1	1e-129	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	G7K270	1e-128	G7K270_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES99630	1e-128	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-61	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Medtr5g083010.1
Entrez Gene	11431147

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]