PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g083960.1

Common Name

MTR_5g083960

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 197aa MW: 21826.7 Da PI: 7.4062

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g083960.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.9	1.1e-40	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l el Medtr5g083960.1 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLIGEL 132 7******************************************************************************************999 PP DUF260 95 allkee 100 ++++ee Medtr5g083960.1 133 NAIREE 138 999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.123	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-40	39	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSRERGRFFD EIGKKREGDE SFQKGRMLGP SGTLNTTTPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS VHKVFGASNV SKLLLEVPEN QRADAANSLV YEANVRLRDP VYGCMGAISS 120 LQQQVQSLIG ELNAIREEIH KYKLMEANML PSSEDVSIAT LPPSTSLPML PSSIYTQQTN 180 PTSYSSISND HISYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	33	159	5	131	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	33	159	5	131	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g083960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	0.0	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616758.1	1e-145	LOB domain-containing protein 15
Swissprot	Q8L5T5	3e-70	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	G7KH28	1e-144	G7KH28_MEDTR; LOB domain protein
STRING	AES99716	1e-145	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-71	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Medtr5g083960.1
Entrez Gene	11430462

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]