PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085130.1
Common NameMTR_5g085130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 180aa    MW: 19543 Da    PI: 8.1995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-131765255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k  +++ AeIr  ++    ++  +lg++ tae+Aa+a++aa+ +++g
  Medtr5g085130.1 17 RYRGVRKRK--HKYGAEIRNpWK----KQCEWLGTYNTAEQAARAYDAAAISFRG 65
                     59***8655..7********883....5999*******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-231773IPR001471AP2/ERF domain
CDDcd000189.55E-141774No hitNo description
PfamPF008471.9E-61765IPR001471AP2/ERF domain
PROSITE profilePS5103218.651773IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-171774IPR016177DNA-binding domain
SMARTSM003803.1E-241779IPR001471AP2/ERF domain
PRINTSPR003679.5E-71829IPR001471AP2/ERF domain
PRINTSPR003679.5E-75575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDRVKAELEK SAGKEIRYRG VRKRKHKYGA EIRNPWKKQC EWLGTYNTAE QAARAYDAAA  60
ISFRGVNAIT NFPIPYNIAS TAMSSTAEAS RVVVGSSTIV SRVLAATPRP LVAAEGCHSK  120
CDSSSVADDE DEDCVIISSS ARKPLNIDLN FPPPPNFNDD EEIRATTLCL SLPAATPRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1517801479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9369470.0CR936947.2 Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616866.11e-130ethylene-responsive transcription factor 3
TrEMBLG7KH811e-129G7KH81_MEDTR; AP2 domain class transcription factor
STRINGAES998241e-130(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-14ERF domain protein 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]