PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085390.1
Common NameMTR_5g085390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 235aa    MW: 26314.6 Da    PI: 5.3077
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.71.2e-359108199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCaaCk++rrkC+++C+lapyfpa++pk f n+h+lFG+sn++++lk++++++ ++ am+s++ e+++ra+ Pv+G++gvi+++   l+q+ +e
  Medtr5g085390.1   9 ACAACKYQRRKCSSECPLAPYFPADKPKMFSNAHRLFGVSNIQRILKDIKDDDqKDVAMRSIIIESDIRAKFPVHGCLGVIMDYGGMLKQSMEE 102
                      7************************************************66554999************************************* PP

           DUF260  94 lallke 99 
                      l+++k+
  Medtr5g085390.1 103 LDHVKT 108
                      998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6228110IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-349107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNIIKPNKAC AACKYQRRKC SSECPLAPYF PADKPKMFSN AHRLFGVSNI QRILKDIKDD  60
DQKDVAMRSI IIESDIRAKF PVHGCLGVIM DYGGMLKQSM EELDHVKTLL AYCNDLQQKQ  120
HIHSSLPYTS SQIPNIPIYN NVGDVPNYYY HPNSENNNMM RASSSSYISD IIPHDVNYSG  180
GDYVMDDNSN LMVPKGLSSN EESDLDLDDI DGGVDEQART TFDLGKKGRF SDSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-231013112131LOB family transfactor Ramosa2.1
5ly0_B5e-231013112131LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379950.0AC137995.31 Medicago truncatula clone mth2-11j1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450910.11e-78LOB domain-containing protein 27
TrEMBLG7KHA71e-173G7KHA7_MEDTR; LOB domain protein
STRINGAES998501e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-32LOB domain-containing protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]