PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g088230.1

Common Name

MTR_5g088230

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 265aa MW: 29233.8 Da PI: 9.2733

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g088230.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.2e-14	194	237	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rrk+kNRe+A rsR+RK+a+ eL +kv Le++N++Lkke Medtr5g088230.1 194 RRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKE 237 6889**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-10	190	262	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.519	192	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-10	194	240	No hit	No description
Pfam	PF00170	5.8E-12	194	238	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.42E-15	194	242	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-12	194	238	No hit	No description
PROSITE pattern	PS00036	0	197	212	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGSQSNGQQS HLQANQLVKQ NSWYGLTLDE VNSLLGDLGK PLGSMNLDEL LQNVWTAEGN 60 KVVGMESEQV SSSSSLQRQA SMTLARALSG KTVDDVWREI QLGQKKQYGD DVKVEDREMS 120 LGGTTLEDFL VQAGLFAGAS TSPTVGLDAM DTAIPQSFQP NTSLVSSSSI SSLSDAKPGR 180 KRDAPDAYEK ALERRLRRKI KNRESAARSR ARKQAYHNEL VTKVTLLEQQ NMQLKKEKEF 240 EQGLQPESSP EPKYRLRRIS SAIF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g088230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130803	0.0	AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024640889.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 6
Swissprot	Q9LES3	2e-53	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A072UF45	0.0	A0A072UF45_MEDTR; BZIP transcription factor
STRING	AET00092	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-48	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Medtr5g088230.1
Entrez Gene	11421448

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]