PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g088230.2
Common NameMTR_5g088230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 270aa    MW: 29764.4 Da    PI: 9.2733
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g088230.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.24.3e-14199242548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      +r rrk+kNRe+A rsR+RK+a+  eL +kv  Le++N++Lkke
  Medtr5g088230.2 199 RRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKE 242
                      6889**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-10195267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519197242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-12199243No hitNo description
SuperFamilySSF579591.56E-10199245No hitNo description
PfamPF001706.0E-12199243IPR004827Basic-leucine zipper domain
CDDcd147071.87E-15199247No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGIQTMGSQS NGQQSHLQAN QLVKQNSWYG LTLDEVNSLL GDLGKPLGSM NLDELLQNVW  60
TAEGNKVVGM ESEQVSSSSS LQRQASMTLA RALSGKTVDD VWREIQLGQK KQYGDDVKVE  120
DREMSLGGTT LEDFLVQAGL FAGASTSPTV GLDAMDTAIP QSFQPNTSLV SSSSISSLSD  180
AKPGRKRDAP DAYEKALERR LRRKIKNRES AARSRARKQA YHNELVTKVT LLEQQNMQLK  240
KEKEFEQGLQ PESSPEPKYR LRRISSAIF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g088230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1308030.0AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640889.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 6
SwissprotQ9LES32e-53AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A072UF450.0A0A072UF45_MEDTR; BZIP transcription factor
STRINGAET000920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124642532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.18e-48ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]