PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g088760.2
Common NameMTR_5g088760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 303aa    MW: 33819.7 Da    PI: 4.7168
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g088760.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.62.8e-186861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P arikki++aded+ +i+  +P l+ska elf+ +l  r++  +     +t++   ++++++  ++fdfl d+v +
  Medtr5g088760.2  6 DTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCIQTCNVFDFLKDTVSK 86
                     5789*************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-25372IPR009072Histone-fold
SuperFamilySSF471132.19E-19488IPR009072Histone-fold
PfamPF008082.9E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDIGKIALA VPLLVSKALE LFLQDLCDRT YEITLGRGAK  60
TVNAFHLKQC IQTCNVFDFL KDTVSKVPDL GGSAATGDDQ TVTKRRKVSE DDDDDDSDEE  120
IKRSKMREPA HTSGRGRGRG RGRGRGRGSK TVDQEINSHV KFEDDCEASK QNGNHTQNNE  180
SPEIVRESDE VKLSSPVREP EEVKHCSPVR KPAEVVVRNF DLNLNPDPDD DMDVISTPTP  240
IPTGSSSKSV SEEKMKSISE EKIEEYPGWS LSDMEKMAID PLQLANLSKR IDEDIEDYDE  300
EV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136146RGRGRGRGRGR
2138147RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.260550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g088760.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541850.0CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454332.10.0dr1-associated corepressor isoform X1
TrEMBLA0A072UGZ00.0A0A072UGZ0_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
STRINGGLYMA02G44500.21e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.14e-58NF-YC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]