PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g089170.1
Common NameMTR_5g089170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 255aa    MW: 29617.5 Da    PI: 6.9407
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g089170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35261172102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ +++++sws+++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fkkg k+ll+
  Medtr5g089170.1  26 FLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANDYFKKGAKHLLC 110
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  Medtr5g089170.1 111 EIHRRKT 117
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.95E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAFTLERCED NMVFTMESQK SVPAPFLTKT YQLVDDPLTD HIVSWSDDET TFVVWRPPEF  60
ARDLLPNFFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANDY FKKGAKHLLC EIHRRKTPQH  120
YQQQYYEQSP QIFQPDESIC WIDSPLPSPK SNTDILTALS EDNQRLRRKN FMLLSELSHM  180
KNLYNDIIYF IQNHVSPASP FEQRSNNSAT ILKLVELDSS SPQLPNDKDC NSSSVKLFGV  240
PLCGKKRVHP SNLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211611711122Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182920.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g089170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365070.0AC136507.19 Medicago truncatula clone mth2-24o19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617219.10.0heat stress transcription factor B-4b
SwissprotQ9C6352e-86HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLG7KCV70.0G7KCV7_MEDTR; Heat shock transcription factor
STRINGAET001780.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-89heat shock transcription factor B4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]