PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g089870.1
Common NameMTR_5g089870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 545aa    MW: 61426.7 Da    PI: 6.7423
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g089870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.7e-172175357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     kR   t+ ql+ Le+++ +++yp++e +  +A++l+Lte+qV+ WF+ rR k+k+
  Medtr5g089870.1 21 KRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKR 75
                     78889************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-18275IPR009057Homeodomain-like
SuperFamilySSF466892.48E-151678IPR009057Homeodomain-like
PROSITE profilePS5007115.4181676IPR001356Homeobox domain
SMARTSM003894.0E-161880IPR001356Homeobox domain
CDDcd000867.28E-142175No hitNo description
PfamPF000461.0E-142175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MEESSELQPE ENKVSAEKFP KRKLKTPAQL KGLEKFYTEH KYPTEELKLA IAEELELTEK  60
QVSGWFCHRR LKDKRLLKEE ANANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDYKYLDPK  120
EVESNGLYNR DLSVADMTYG RRNHFSENVS GMDDDTSSES SSYLQERMYP QGQDPYEMEP  180
SRYSKALPPL NPKGAINMGY KPSGYLKVKG EIEHAAITAV KKQLGRNYQE DGPLLGVEFD  240
PLPPGAFECQ TEEAVHEPYH IADPALLNSP EISTVKSRPG LSSRYDSYYT KHGSQDTHME  300
GVDFGSLHDV HVQDKQDKKA LHGTKHRQTF QSNAGRFPGR NSSLDLYEDS TGEAAYNITK  360
NHRKDAKRGV EGIRSDSTSN HSDRYEENLP VKHSDFLQYN YENTNQKNVQ RSVHADILQY  420
DYDNVNPKKA PRSEHIKSKP SNSIHNSRGS VDTEERGLSS RMTKDELFKG DRKSKKQYRD  480
AGGAGMLSNE TMVAKRLKAN TFQPYNMKQV PVAEIEPRKT QRSAAEMPSS FSEDETADTS  540
SSLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925PKRKLKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.9280.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g089870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1466920.0AC146692.14 Medicago truncatula clone mth2-7n20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617278.10.0homeobox-DDT domain protein RLT2
TrEMBLG7K3650.0G7K365_MEDTR; Homeobox leucine zipper protein
STRINGAET002370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.18e-75HB-other family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]