PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g090970.1
Common NameMTR_5g090970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 312aa    MW: 36029.6 Da    PI: 8.4463
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g090970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49191462128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtd+elv +yL++kve+k+l++ e ike+diyk++PwdLpk+ + +eke+yfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ 
  Medtr5g090970.1  19 LPGFRFHPTDDELVGFYLRRKVEKKPLRI-ELIKEIDIYKYDPWDLPKASTVGEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCV 111
                      69***************************.89***************8888899**************************************98 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Medtr5g090970.1 112 keSHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                      555666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5416177IPR003441NAC domain
PROSITE profilePS5100551.12318178IPR003441NAC domain
PfamPF023652.8E-2420146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVAKLDNFD DKKEDEVVLP GFRFHPTDDE LVGFYLRRKV EKKPLRIELI KEIDIYKYDP  60
WDLPKASTVG EKECYFFCLR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYC VKESHECIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPKG KTSNNQVLNH TNDVQEAEVW TLCRIFKRIP  180
SYKKYTPNVK KDSEAAAFTI NSSSSKTCSL DSDNTKPQYL TFTNSQHVVQ QNHETKPFIN  240
GHVVDQRFNN SFLNQLGNAA QVPTTTLSHS SFWNDQNVLD DAFANENWDD LRSIVQFTFD  300
PSKVYDCKDF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-472018419171NO APICAL MERISTEM PROTEIN
1ut4_B2e-472018419171NO APICAL MERISTEM PROTEIN
1ut7_A2e-472018419171NO APICAL MERISTEM PROTEIN
1ut7_B2e-472018419171NO APICAL MERISTEM PROTEIN
4dul_A2e-472018419171NAC domain-containing protein 19
4dul_B2e-472018419171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.173960.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g090970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376540.0CU137654.2 Medicago truncatula chromosome 5 clone mth2-13f1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617382.10.0transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK558e-97NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLG7K3B60.0G7K3B6_MEDTR; Putative transcription factor NAM family
STRINGAET003410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-93NAC domain containing protein 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]